Related projects and instruments

Open-source software

• Phasor-based single-molecule localization microscopy
  Very fast and accurate single-molecule localization algorithm implemented in the open-source ThunderSTORM ImageJ plugin.
• ThunderSTORM
  An open-source, interactive, and modular plug-in for ImageJ designed for automated processing, analysis, and visualization of data acquired by single molecule localization microscopy methods.
• NanoJ-SQUIRREL
  Quantitative mapping and minimization of super-resolution optical imaging artifacts.
• Ray optics web app
  An open-source web application to simulate reflection and refraction of light.
• fairSIM
  Open-source image reconstruction of super-resolution structured illumination microscopy data in ImageJ.
• Cluster analysis for SMLM data
  Software packages for cluster identification and anlasyis. Owen lab.

Open-source hardware

• µCube
  A framework for 3D printable optomechanics. Github here. Haseloff lab 2018.
• NanoJ-fluidics
  Open-source fluid exchange in microscopy. Github here. Henriques lab 2018.
• WOSM
  The Warwick Open Source Microscope.
• liteTIRF
  Super-resolution for 20k Euros. See also here for a detailed description. Jungmann lab 2018.
• NicoLase
  An open-source diode laser combiner, fiber launch, and sequencing controller for fluorescence microscopy. Github here. Gaus lab 2017.
• OpenFlexure microscope
  A one-piece 3D printed flexure translation stage for open-source microscopy. Bowman lab 2016.
• openSPIM
  An Open Access platform for applying and enhancing Selective Plane Illumination Microscopy.
• eduSPIM
  An educational light sheet microscope. Huisken lab 2016.
• Smartphone Fluorescence Spectroscopy
  A smartphone spectrophotometry for readout of fluorescence-based biological assays.
• Open-Source Two-Photon Microscopy
  A high performance, cost-effective, open-source microscope for scanning two-photon microscopy that is modular and readily adaptable.
• easySTORM
  easySTORM: a robust, lower-cost approach to localisation and TIRF microscopy. French lab 2016.
• STORM
  A blueprint for cost-efficient localization microscopy. Sauer lab 2014.
• Omnipresent Localisation Microscope (OLM)
  High-density superresolution microscopy with an incoherent light source and a conventional epifluorescence microscope setup. Prakash 2018.
• pgFocus
  pgFocus is an open source and open hardware, for noncommercial use, focus stabilization device developed by Karl Bellvé.
• Microscope incubation box
  Microscope incubation box for home built single molecule microscope. Holden lab.
• UC2 Open-Science modular microscope system
  UC2 is a general-purpose modular framework for making interactive (electro)-optical projects. Heintzmann lab.
• LaserEngine
  Blueprints for a low-cost laser engine for wide-field and localization microscopy. Information on their Github Wiki and publication (Biomedical Optics Express, 2020). Ries lab, 2019.
• Octopi
  Open configurable high-throughput imaging platform for infectious disease diagnosis in the field. Prakash lab, 2019.

Commercial

• Oxford Nanoimaging
  A commercial desktop-compatible, super-resolution, single-molecule fluorescence microscope.
• Re-scan confocal microscope (RCM)
  RCM combines the super-resolution capability with drastically higher sensitivity than most confocal microscopes.